PTM Viewer

AT4G26630.1

Arabidopsis thaliana [ath]

DEK domain-containing chromatin associated protein

49 PTM sites : 5 PTM types

Gene Family: HOM05D001707

Other Names: DEK3,DEK-domain containing protein 3

Uniprot

Link out to other resources with this protein ID : TAIR | PeptideAtlas | ARAPORT | PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs

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Results

PTM Type	Mod AA	Pos	Peptide	Exp ID	Log2 FC	P/Q val	Score Type	Ident Score	Loc Prob	PEP	Mass Error (ppm)
nt	G	2	GEDTKATIEPTANKTTSLEKPSE	167b
			GEDTKATIEPTANKTTSLE	119			MaxQuant score	91.889
			GEDTKATIEPTAN	99	-0.176	0.174	MASCOT Score	37.640		1.710e-2	-1.588
nta	G	2	GEDTKATIEPTAN	99	0.071	0.576	MASCOT Score	36.790		3.127e-2	-1.531
ac	K	15	ATIEPTANKTTSLEKPSEAMAGK	101
ph	T	17	TTSLEKPSEAMAGK	88			MASCOT Score	44.000	0.984		-1.250
ph	S	18	TTSLEKPSEAMAGK	85			XCorr	2.239	0.761	4.603e-3
				88			MASCOT Score	36.000	1.000		-0.750
				109					0.999
				114			MaxQuant score	248.940	1.000	0.000e+0
ph	T	115	KEQTDDGVSVEDTVMK	114			MaxQuant score	188.340	1.000	6.346e-27
ph	S	120	EQTDDGVSVEDTVMK	88			MASCOT Score	28.000	1.000		0.810
				100			XCorr	4.114	1.000	1.863e-6
				114			MaxQuant score	213.020	1.000	0.000e+0
ph	T	194	DGNTGDIKEEGTLVDEDKGTDMDEK	38			MASCOT Score	51.900
				60			MASCOT Score	47.740			-1.037
				83			MASCOT Score	53.000			0.002
				85			XCorr	3.713	1.000	2.699e-3
				109					1.000
			EEGTLVDEDKGTDMDEK	83			MASCOT Score	53.000			0.001
				100			XCorr	3.165	1.000	1.456e-2
				114			MaxQuant score	313.430	1.000	0.000e+0
ph	S	238	AEVDESKVEDEK	100			XCorr	4.379	1.000	2.788e-5
ph	S	238	AEVDESKVEDEK	114			MaxQuant score	170.350	1.000	1.841e-14
ph	S	247	AEVDESKVEDEKEGSEDENDNEKVESK	88			MASCOT Score	27.000	1.000		-0.550
			AEVDESKVEDEKEGSEDENDNEK	18a			MaxQuant Score	153.120	1.000	1.897e-34	-0.466
				38			MASCOT Score	83.130			-1.446
				60			MASCOT Score	73.660			-0.837
				83			MASCOT Score	82.000			0.000
				84a			XCorr	4.930	1.000	3.233e-3
				84b	-1.716		XCorr	5.070	1.000	4.740e-12
				85			XCorr	5.971	1.000	1.210e-4
				94			MaxQuant Score	69.779	1.000	1.900e-2	1.020
				100			XCorr	4.148	1.000	9.768e-5
			VEDEKEGSEDENDNEKVESK	38			MASCOT Score	95.470			-1.436
				60			MASCOT Score	72.650			-0.922
				84b	-1.428		XCorr	4.690	1.000	7.490e-7
				85			XCorr	4.520	1.000	1.274e-11
				88			MASCOT Score	43.000	1.000		2.300
				109					1.000
				114			MaxQuant score	419.430	1.000	0.000e+0
			VEDEKEGSEDENDNEK	38			MASCOT Score	101.350			-1.057
				60			MASCOT Score	85.540			-1.561
				85			XCorr	4.358	1.000	7.877e-4
				88			MASCOT Score	39.000	1.000		0.010
			EGSEDENDNEKVESK	38			MASCOT Score	49.850			-1.702
			EGSEDENDNEKVESK	85			XCorr	2.283	1.000	1.141e-2
			EGSEDENDNEK	38			MASCOT Score	46.380			-0.122
				60			MASCOT Score	35.180			-0.122
				88			MASCOT Score	54.000	1.000		-0.020
ub	K	288	GKGTSSGGKVR	40			MaxQuant Score	94.767	1.000	1.453e-10	-0.036
ub	K	295	GKGTSSGGKVR	40			MaxQuant Score	94.767	1.000	1.453e-10	-0.036
ub	K	299	EKNKTEEVKKDAEPR	40			MaxQuant Score	127.830	1.000	1.925e-23	-0.761
ub	K	306	EKNKTEEVKKDAEPR	40			MaxQuant Score	127.830	0.965	1.925e-23	-0.761
ub	K	307	EKNKTEEVKKDAEPR	40			MaxQuant Score	68.481	0.881	7.350e-6	-1.042
ph	T	313	DAEPRTPFSDRPVR	83			MASCOT Score	32.000			0.000
			DAEPRTPFSDRPVR	100			XCorr	2.593	0.982	1.361e-2
			DAEPRTPFSDR	88			MASCOT Score	21.000	1.000		0.250
			TPFSDRPVR	114			MaxQuant score	149.520	1.000	1.782e-7
ph	S	316	DAEPRTPFSDRPVR	114			MaxQuant score	79.820	1.000	1.230e-3
ub	K	335	LVALIDKDSSKEFR	40			MaxQuant Score	43.761	0.984	1.000e-3	1.409
ph	S	337	LVALIDKDSSK	88			MASCOT Score	24.000	0.916		-1.500
ub	K	339	LVALIDKDSSKEFR	40			MaxQuant Score	79.875	0.987	5.766e-5	1.090
ph	T	446	KEDIITK	114			MaxQuant score	83.862	1.000	9.799e-3
ph	S	487	KTSPTAGSSSSKR	85			XCorr	2.060	0.829	2.058e-2
			KTSPTAGSSSSK	88			MASCOT Score	60.000	0.994		-2.160
			TSPTAGSSSSK	88			MASCOT Score	62.000	0.873		-0.760
ph	T	489	KTSPTAGSSSSK	88			MASCOT Score	54.000	0.982		-1.670
ac	K	496	KTSPTAGSSSSKR	101
ac	K	496	TSPTAGSSSSKR	101
ub	K	496	TPKKTSPTAGSSSSKR	40			MaxQuant Score	80.738	1.000	1.988e-9	0.063
ac	K	510	KSEEATKVVK	101
			SEEATKVVK	98a	0.289	0.269	MaxQuant Score	151.200	1.000	3.500e-8
				98c	0.825	0.989	MaxQuant Score	143.960	1.000	8.000e-4
				101
ph	S	515	SLAHSDDESEEEKEEEEKQEEEK	83			MASCOT Score	42.000			-0.008
ph	S	519	SLAHSDDESEEEKEEEEKQEEEK	83			MASCOT Score	47.000			-0.002
				84b			XCorr	4.210	0.792	1.040e-5
				100			XCorr	5.785	0.853	2.794e-6
			KSLAHSDDESEEEKEEEEK	38			MASCOT Score	53.600
			KSLAHSDDESEEEKEEEEK	100			XCorr	4.997	0.959	1.009e-2
			SLAHSDDESEEEKEEEEK	38			MASCOT Score	62.610
				60			MASCOT Score	42.210			-0.677
				83			MASCOT Score	52.000			-0.002
				84b			XCorr	2.410	0.883	2.170e-8
				94			MaxQuant Score	150.910	1.000	5.333e-7	0.636
				100			XCorr	5.226	0.984	3.486e-5
				109					1.000
			KSLAHSDDESEEEK	38			MASCOT Score	63.770
			KSLAHSDDESEEEK	60			MASCOT Score	64.450			-1.248
			SLAHSDDESEEEK	38			MASCOT Score	56.880
				60			MASCOT Score	49.160			-1.054
				100			XCorr	4.434	0.977	6.099e-4
				114			MaxQuant score	206.960	1.000	0.000e+0
ph	S	523	SLAHSDDESEEEKEEEEKQEEEK	83			MASCOT Score	58.000			-0.002
				84b			XCorr	3.400	0.982	4.780e-4
				100			XCorr	4.712	1.000	5.555e-5
			KSLAHSDDESEEEKEEEEK	100			XCorr	4.997	0.999	1.009e-2
			SLAHSDDESEEEKEEEEK	60			MASCOT Score	42.210			-0.677
				83			MASCOT Score	52.000			-0.002
				84b			XCorr	2.410	1.000	2.170e-8
				94			MaxQuant Score	150.910	1.000	5.333e-7	0.636
				100			XCorr	5.479	1.000	4.990e-7
			KSLAHSDDESEEEK	60			MASCOT Score	64.450			-1.248
			SLAHSDDESEEEK	60			MASCOT Score	49.160			-1.054
				100			XCorr	4.434	0.999	6.099e-4
				114			MaxQuant score	206.960	1.000	0.000e+0
ph	S	557	KEEENENGIPDKSEDEAPQPSESEEK	38			MASCOT Score	49.190
				60			MASCOT Score	36.570			-0.958
				100			XCorr	6.784	1.000	6.686e-5
ph	S	565	SEDEAPQPSESEEKDESEEHSEEETTK	100			XCorr	5.057	1.000	4.977e-5
			KEEENENGIPDKSEDEAPQPSESEEK	38			MASCOT Score	53.080
				60			MASCOT Score	43.190			-0.541
				100			XCorr	6.784	1.000	6.686e-5
			EEENENGIPDKSEDEAPQPSESEEK	38			MASCOT Score	46.510
			EEENENGIPDKSEDEAPQPSESEEK	60			MASCOT Score	41.420			-0.797
			SEDEAPQPSESEEK	100			XCorr	4.172	0.924	1.368e-5
ph	S	567	SEDEAPQPSESEEKDESEEHSEEETTK	100			XCorr	5.057	1.000	4.977e-5
			KEEENENGIPDKSEDEAPQPSESEEK	60			MASCOT Score	43.190			-0.541
			KEEENENGIPDKSEDEAPQPSESEEK	100			XCorr	6.784	1.000	6.686e-5
			EEENENGIPDKSEDEAPQPSESEEK	60			MASCOT Score	41.420			-0.797
			SEDEAPQPSESEEK	100			XCorr	3.345	1.000	2.100e-2
ph	S	573	DESEEHSEEETTKK	114			MaxQuant score	69.986	1.000	3.583e-4
ph	S	577	DESEEHSEEETTKK	114			MaxQuant score	69.986	0.993	3.583e-4
ub	K	594	LSAGKKESAGR	40			MaxQuant Score	88.338	1.000	2.900e-4	-0.092
ub	K	595	LSAGKKESAGR	40			MaxQuant Score	88.338	1.000	2.900e-4	-0.092
ac	K	611	AVVAAKSSPPEK	101
ph	S	613	AVVAAKSSPPEKITQK	46			MASCOT Score	27.170			2.208
ph	S	613	AVVAAKSSPPEK	46			MASCOT Score	43.340			15.484
ph	S	634	TDDDSDTSPKASSKR	38			MASCOT Score	52.150			-0.058
			KTDDDSDTSPKASSK	38			MASCOT Score	43.890			0.315
			KKTDDDSDTSPK	85			XCorr	4.334	1.000	9.526e-4
			KKTDDDSDTSPK	114			MaxQuant score	117.000	0.995	1.310e-5
			KTDDDSDTSPK	85			XCorr	3.734	1.000	5.014e-3
			KTDDDSDTSPK	88			MASCOT Score	46.000	1.000		0.030
			TDDDSDTSPK	85			XCorr	4.166	1.000	1.274e-2
			TDDDSDTSPK	88			MASCOT Score	53.000	1.000		0.040
ph	T	636	TDDDSDTSPKASSK	88			MASCOT Score	30.000	0.944		1.040
ph	T	636	KTDDDSDTSPK	88			MASCOT Score	22.000	0.993		-1.010
ph	S	637	TDDDSDTSPKASSK	88			MASCOT Score	30.000	1.000		1.040
ph	S	637	KTDDDSDTSPK	88			MASCOT Score	22.000	0.995		-0.970
ph	S	654	KSENPIKASPAPSK	114			MaxQuant score	223.540	1.000	0.000e+0
			SENPIKASPAPSK	38			MASCOT Score	57.410			-1.022
				60			MASCOT Score	33.700			-0.723
				85			XCorr	2.964	1.000	1.568e-8
				88			MASCOT Score	56.000	1.000		-1.120
ac	K	659	ASPAPSKSASK	101
ph	S	660	ASPAPSKSASK	88			MASCOT Score	29.000	0.943		-1.840
ac	K	683	VLKNAIVEILK	101
ac	K	691	NAIVEILKR	101
ph	T	716	EFTEDLTPR	88			MASCOT Score	42.000	1.000		-1.180
				109					1.000
				114			MaxQuant score	144.170	1.000	2.413e-4
ph	S	747	EEDSEKEEAGGSGGGEEVKA	38			MASCOT Score	103.340			-0.826
				60			MASCOT Score	77.450			-1.308
				100			XCorr	2.299	0.944	4.801e-3
			KEEDSEKEEAGGSGGGEEVK	38			MASCOT Score	87.520			-0.632
				60			MASCOT Score	63.110			-0.421
				100			XCorr	4.830	0.994	1.304e-3
			EEDSEKEEAGGSGGGEEVK	38			MASCOT Score	82.160			-0.812
				60			MASCOT Score	68.990			-1.311
				100			XCorr	3.664	1.000	2.533e-5
			LADEEEEEEKKEEDSEK	60			MASCOT Score	39.360			-1.810
				83			MASCOT Score	40.000			-0.001
				100			XCorr	4.569	1.000	5.354e-5
				114			MaxQuant score	177.530	1.000	3.400e-37
ph	S	755	KEEDSEKEEAGGSGGGEEVK	100			XCorr	4.497	1.000	1.365e-5
			EEAGGSGGGEEVKA	38			MASCOT Score	75.010			0.098
				60			MASCOT Score	68.430			0.098
				114			MaxQuant score	105.580	1.000	2.896e-5

Sequence

Length: 763

MGEDTKATIEPTANKTTSLEKPSEAMAGKENAGGKETQELAKDEDMAEPDNMEIDAQIKKDDEKAETEDKESEVKKNEDNAETQKMEEKVEVTKDEGQAEATNMDEDADGKKEQTDDGVSVEDTVMKENVESKDNNYAKDDEKETKETDITEADHKKAGKEDIQHEADKANGTKDGNTGDIKEEGTLVDEDKGTDMDEKVENGDENKQVENVEGKEKEDKEENKTKEVEAAKAEVDESKVEDEKEGSEDENDNEKVESKDAKEDEKEETNDDKEDEKEESKGSKKRGKGTSSGGKVREKNKTEEVKKDAEPRTPFSDRPVRERKSVERLVALIDKDSSKEFRVEKGRGAYLKDIPNVANKVMRKRSDETLKLLHPILFGGRRGKAAQIKTNILGFSGFVWHGDEKKAKEKVKEKLEKCTKEKLWEFCDVLDIHITKATTKKEDIITKLFEFLEKPHVTGDVTGDTTVSEKEKSSKGAKRKRTPKKTSPTAGSSSSKRSAKSQKKSEEATKVVKKSLAHSDDESEEEKEEEEKQEEEKAEEKEEKKEEENENGIPDKSEDEAPQPSESEEKDESEEHSEEETTKKKRGSRLSAGKKESAGRARNKKAVVAAKSSPPEKITQKRSSAKRKKTDDDSDTSPKASSKRKKSENPIKASPAPSKSASKEKPVKRAGKGKDKPSDKVLKNAIVEILKRVDFSTATFTDILKELAKEFTEDLTPRKSSIKMIIQEELTKLADEEEEEEKKEEDSEKEEAGGSGGGEEVKA

ID	PTM Type	Color
nt	N-terminus Proteolysis	X
nta	N-terminal Acetylation	X
ac	Acetylation	X
ph	Phosphorylation	X
ub	Ubiquitination	X
	Multiple types	X

Domains & Sites

Clear highlighted range

**Interpro Domains**
Show	IPR ID	Description	From	To
	IPR014876	DEK, C-terminal	676	731

AT4G26630.1

Arabidopsis thaliana [ath]

DEK domain-containing chromatin associated protein

49 PTM sites : 5 PTM types

PLAZA: AT4G26630

Gene Family: HOM05D001707

Other Names: DEK3,DEK-domain containing protein 3

Uniprot

Q9SUA1

Link out to other resources with this protein ID : TAIR | PeptideAtlas | ARAPORT | PhosPhAt

PTMs

Sequence

Length: 763

Domains & Sites

BLAST

Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here

AT4G26630.1

Arabidopsis thaliana [ath]

DEK domain-containing chromatin associated protein

49 PTM sites : 5 PTM types

PLAZA: AT4G26630

Gene Family: HOM05D001707

Other Names: DEK3,DEK-domain containing protein 3

Uniprot

Q9SUA1

Link out to other resources with this protein ID : TAIR | PeptideAtlas | ARAPORT | PhosPhAt

PTMs

Sequence

Length: 763

Domains & Sites

BLAST

Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)A downloadable tutorial can be found here

Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here